First, MakerGear is awesome, I ordered my M2 on Monday, they shipped it the next day, got it today, and I'm on my way to first prints! I'm a complete noob, have been reading a lot, and had a few questions:
First, my setup:
MakerGear M2, I think this is the latest one, comes with V4 head, printing the PLA that came with. I have the M2 hooked up to Octoprint loaded on a win7 machine, works fine. I am using Slic3r on my main computer to slice prints, sending them to Octoprint to print.
1. I'm having a hard time with slicing the included tallthin.STL file through Slic3r. I'm loading Slic3r with the config.ini file that shipped on the SD card. When I print my sliced file, my print doesn't look nearly as good as when I printed the included tallthin.g file from MakerGear. Here is a picture of the included gcode, through Octoprint. Beautiful.

This is what it looks like when I try to print it after slicing it through Slic3r. The print looks horrible.

These are both printed with a HBP at 70C and Extruder at 220C like it says in the userguide. I'm thinking that the config.ini file is a bit old and doesn't match up with the new Slic3r program? I also noticed, when looking at the gcode of the sliced file, the head moves to a different starting position between layers, really funky compared to the included gcode. When it does this, it moves at max speed it seems. I thought the printer was skipping or shuddering. I don't see any settings except for one that randomizes the seams, but its unchecked.
2. Octoprint will home the xyz axis fine, and trigger the stops, but it also allows me to manually move the bed past the stops after I hit them. Makes an awful noise.

Thanks in advanced!