Been printing as much as I can these past few days. Started a nice robot model and about 20mins later I found I had left my infill at %100! cancelled that print pretty quick

Just finished printing a beautiful tricopter frame and as far as I can tell, there are no issues or artifacts (is that the right word?) on the prints at all. S3D is doing a beautiful job and the printer is running perfectly. I do have a couple of questions though.
1. The clips that hold the glass plate on.... where is the best place to put them? can I somehow get rid of them? I started a large print and the fan hit one up front (just barely) and the nozzle slammed into one of the clips on the back side. Should I just be more careful placing my prints in S3D? or is there a better method?
2. The wire harness coming off of the HBP, it isn't really supported at all.... is there a better way to support those wires? would someone mind posting a pic of how theirs is hanging?
3. At the end of a print the bed just drops down full speed and slams into the Z motor. Is there a way to prevent this? maybe an end g-code that will take it to the bottom in a controlled manner so it only has a few mm to drop instead of 8-9 inches! I seen a printable spring type device that I may print in the meantime to help.
Thanks again guys!